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https://github.com/hendricius/the-sourdough-framework
synced 2025-11-09 12:41:12 -06:00
Simplify epub test file
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@@ -47,35 +47,35 @@ produce a lot of \ch{CO2}.
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\end{center}
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\end{figure}
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% Works
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% Generate first with: cd figures && pdflatex fig-ethanol-oxidation-external.tex
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\begin{figure}[!htb]
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\begin{center}
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\includegraphics{figures/fig-ethanol-oxidation-external.png}
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\caption[Acetic acid creation]{Oxygen is required to create acetic
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acid~\cite{acetic+acid+production}.}%
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\end{center}
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\end{figure}
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% Does not work
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\begin{figure}[!htb]
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\begin{center}
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\input{figures/fig-life-planet-sourdough-timeline.tex}
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\caption[Sourdough microbiology timeline]{Timeline giberrish on website}%
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\end{center}
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\end{figure}
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% Works
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% Generate first with: cd figures && pdflatex fig-life-planet-sourdough-timeline-external.pdf
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\begin{figure}[!htb]
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\includegraphics{figures/fig-life-planet-sourdough-timeline-external.png}
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\caption[Sourdough microbiology timeline]{Timeline works embedded as png}%
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\end{figure}
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\begin{figure}[!htb]
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\includegraphics[width=\textwidth]{baking-experiment-temperatures.png}
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\caption[Surface temperature for different steaming methods]{png file}
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\end{figure}
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%% Works
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%% Generate first with: cd figures && pdflatex fig-ethanol-oxidation-external.tex
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%\begin{figure}[!htb]
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% \begin{center}
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% \includegraphics{figures/fig-ethanol-oxidation-external.png}
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% \caption[Acetic acid creation]{Oxygen is required to create acetic
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% acid~\cite{acetic+acid+production}.}%
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% \end{center}
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%\end{figure}
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%
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%% Does not work
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%\begin{figure}[!htb]
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%\begin{center}
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% \input{figures/fig-life-planet-sourdough-timeline.tex}
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% \caption[Sourdough microbiology timeline]{Timeline giberrish on website}%
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%\end{center}
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%\end{figure}
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%
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%% Works
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%% Generate first with: cd figures && pdflatex fig-life-planet-sourdough-timeline-external.pdf
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%\begin{figure}[!htb]
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% \includegraphics{figures/fig-life-planet-sourdough-timeline-external.png}
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% \caption[Sourdough microbiology timeline]{Timeline works embedded as png}%
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%\end{figure}
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%
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%\begin{figure}[!htb]
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% \includegraphics[width=\textwidth]{baking-experiment-temperatures.png}
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% \caption[Surface temperature for different steaming methods]{png file}
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%\end{figure}
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\begin{figure}[!htb]
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\includegraphics[width=\textwidth]{baking-process-steam.jpg}
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@@ -104,12 +104,5 @@ a sample of your brew and checking the color.
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different baking methods.}
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\end{center}
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\end{table}
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{%
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\hypersetup{hidelinks}
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\listofflowcharts
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\listoftables
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\listoffigures
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}
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\printbibliography
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\end{document}
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@@ -1,11 +0,0 @@
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\documentclass[tikz]{standalone}
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\usepackage{chemfig}
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\begin{document}
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\footnotesize
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\schemestart
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\chemfig{H-C(-[2]H)(-[6]H)-C(-[2]H)(-[6]H)-O(-[7]H)} \+
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\chemfig{O_2} \arrow
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\chemfig{H-C(-[2]H)(-[6]H)-C(=[1]O)-[7]O-H} \+
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\chemfig{H_2O}
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\schemestop
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\end{document}
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@@ -1,87 +0,0 @@
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\documentclass[tikz]{standalone}
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\usepackage{tikz}
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\definecolor{codeblack}{RGB}{40, 40, 40}
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\definecolor{pinkpic}{RGB}{246, 183, 194}
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\tikzstyle{timeline_event}=[align=center, fill=white, inner sep=2pt]
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\tikzstyle{timeline_timespan} = [rectangle, draw=codeblack, fill=pinkpic, text=black,
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text centered, rounded corners, line width=0.4mm]
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\begin{document}
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\begin{tikzpicture}
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% Draw horizontal line
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\draw[line width=1pt] (0,0) -- (\textwidth,0);
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% Define the width of each segment
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\pgfmathsetlengthmacro{\segmentwidth}{\textwidth/12}
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% Draw lines for the events, higher up so that they don't overflow the text
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% Placing the lines has been a bit manual work of trying different values
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% Maritime bacteria.
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\draw[line width=1pt] (2.8*\segmentwidth,1) -- (2.8*\segmentwidth,0.2);
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% Eukaryotes
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\draw[line width=1pt] (5.8*\segmentwidth,1.5) -- (5.8*\segmentwidth,0.2);
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% First bacteria on land
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\draw[line width=1pt] (9.1*\segmentwidth,-1.25) -- (9.1*\segmentwidth,-0.2);
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% Maritime fungi ancestors
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\draw[line width=1pt] (9.5*\segmentwidth,-2) -- (9.5*\segmentwidth,-0.2);
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% Fungi on land
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\draw[line width=1pt] (10.8*\segmentwidth,-2.75) -- (10.8*\segmentwidth,-0.2);
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% Yeasts on land
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\draw[line width=1pt] (11.1*\segmentwidth,-3.0) -- (11.1*\segmentwidth,-0.2);
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% First dinosaurs
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\draw[line width=1pt] (11.4*\segmentwidth,0.5) -- (11.4*\segmentwidth,0.2);
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% Pangea begins to rift apart
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\draw[line width=1pt] (11.6*\segmentwidth,1) -- (11.6*\segmentwidth,0.2);
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% Dinosaur extinction
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\draw[line width=1pt] (11.9*\segmentwidth,1.5) -- (11.9*\segmentwidth,0.2);
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% Special lines for december events since they are so close togehter
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\draw[line width=1pt] (12.0*\segmentwidth,3.0) -- (12.0*\segmentwidth,0.2); % Main branch
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\draw[line width=1pt] (12.0*\segmentwidth,3.0) -- (11.75*\segmentwidth,2.5); % Branch to first humans
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\draw[line width=1pt] (12.0*\segmentwidth,3.0) -- (11.75*\segmentwidth,3.0); % Branch to Jordan
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\draw[line width=1pt] (12.0*\segmentwidth,3.0) -- (11.75*\segmentwidth,3.5); % Branch to Pasteur
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% Draw months and month separators
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\foreach \i/\month in {0/Jan, 1/Feb, 2/Mar, 3/Apr, 4/May, 5/Jun, 6/Jul, 7/Aug, 8/Sep, 9/Oct, 10/Nov, 11/Dec} {
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% Separators
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\draw[line width=1pt] (\i*\segmentwidth,0.1) -- (\i*\segmentwidth,-0.1);
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% Month names
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\node[timeline_event, below] at ({(\i+0.5)*\segmentwidth},-0.1) {\month};
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}
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\draw[line width=1pt] (\textwidth,0.1) -- (\textwidth,-0.1);
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% Full timeline width for billion years
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\draw[line width=1pt] (0,-3.8) -- node[midway, timeline_timespan] {5.45 billion years} (\textwidth,-3.8);
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\draw[line width=1pt] (0,-3.7) -- (0,-3.9);
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\draw[line width=1pt] (\textwidth,-3.7) -- (\textwidth,-3.9);
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% Indicator for the period of 3 months = 1.1 billion years
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\draw[line width=1pt] (0,-1.0) -- node[midway, timeline_timespan] {1.11 billion years} ({\segmentwidth * 3},-1.0);
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\draw[line width=1pt] (0,-0.9) -- (0,-1.1);
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\draw[line width=1pt] ({\segmentwidth * 3},-0.9) -- ({\segmentwidth * 3},-1.1);
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% Place events on the timeline with dates using the timeline_event style
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% As a calculation I used (4.54 billion years / 12 months = 0.3785 billion years/month.
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\node[timeline_event, above] at (2.0*\segmentwidth,1) {Mar 25 - First maritime bacteria and archae};
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\node[timeline_event, above] at (4.50*\segmentwidth,1.5) {June 25 - First organisms with nuklei (eukaryotes)};
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\node[timeline_event, above] at (7.8*\segmentwidth,-1.5) {Oct 4 - First bacteria on land};
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\node[timeline_event, above] at (8.0*\segmentwidth,-2.25) {Oct 15 - First maritime ancestors of fungi};
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\node[timeline_event, above] at (9.7*\segmentwidth,-2.75) {Nov 24 - Fungi on land};
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\node[timeline_event, above] at (10.5*\segmentwidth,-3.25) {Dec 3 - Yeasts on land};
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\node[timeline_event, above] at (10.2*\segmentwidth,0.5) {Dec 14 - First dinosaurs};
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\node[timeline_event, above] at (9.8*\segmentwidth,1) {Dec 17 - Pangea begins to rift apart};
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\node[timeline_event, above] at (10.33*\segmentwidth,1.5) {Dec 29 - Dinosaurs go extinct};
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\node[timeline_event, above, anchor=east, align=right] at (11.75*\segmentwidth,2.5) {Dec 31 - First humans};
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\node[timeline_event, above, anchor=east, align=right] at (11.75*\segmentwidth,3.0) {Dec 31 - Sourdough in Jordan (23:59:55)};
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\node[timeline_event, above, anchor=east, align=right] at (11.75*\segmentwidth,3.5) {Dec 31 - Louis Pasteur isolated yeast (23:59:59)};
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\end{tikzpicture}
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\end{document}
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